Detecting Patterns of Topological Signal Using Bipartition Covariance Networks
When looking for patterns in topological signals between competing phylogenetic hypotheses, one extremely helpful tool is bipartition covariance networks. By...
Analyzing Data
Finding Structured Patterns in Treespace using Community Detection
Once you have performed an NLDR and visualized your trees in treespace, you may want to do additional analyses to find natural grouping of trees in ...
Visualizing TreeSpace using NLDR
Once you have inferred a set of trees, either using the Cipres Rest API or a third party program, CloudForest can be used to perform several differe...
Getting Started
Installing CloudForest, and utilizing the Cipres Rest API to infer trees
1. Install and run Docker Installation directions vary by operating system. Detailed instructions can be found here. Once downloaded and run, Docker...